Maester Aemon was born Prince Aemon Targaryen and, as a second-born Prince, was the heir to the Iron Throne before relinquishing his family name and birthright to become a Maester.
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Maester Aemon, born Aemon Targaryen, is the third son of King Maekar I Targaryen and his wife Dyanna Dayne. He has served as a maester to the Night's Watch at Castle Black for so long that the rest of the Seven Kingdoms has forgotten about his Targaryen blood.